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bjornwallner / DockQ

DockQ is a single continuous quality measure for protein docked models based on the CAPRI evaluation protocol
MIT License
186 stars 46 forks source link

Running Readme Example #4

Closed YomnaJehad closed 2 months ago

YomnaJehad commented 2 years ago

I'm following the instructions on the readme file, I clones the repo, moved to its directory, run the make command then I'm trying to run the example provided as well. but when I do an error comes up. the example command: bash ./DockQ.py examples/model.pdb examples/native.pdb The error that shows up import-im6.q16: attempt to perform an operation not allowed by the security policy 'PS' @ error/constitute.c/IsCoderAuthorized/408. from: can't read /var/mail/Bio ./DockQ.py: line 6: syntax error near unexpected token 'ignore',' ./DockQ.py: line 6: 'warnings.simplefilter('ignore', BiopythonWarning)'

daniel1991zy commented 2 years ago

I'm following the instructions on the readme file, I clones the repo, moved to its directory, run the make command then I'm trying to run the example provided as well. but when I do an error comes up. the example command: bash ./DockQ.py examples/model.pdb examples/native.pdb The error that shows up import-im6.q16: attempt to perform an operation not allowed by the security policy 'PS' @ error/constitute.c/IsCoderAuthorized/408. from: can't read /var/mail/Bio ./DockQ.py: line 6: syntax error near unexpected token 'ignore',' ./DockQ.py: line 6: 'warnings.simplefilter('ignore', BiopythonWarning)'

You can try the python instead of bash

bjornwallner commented 2 years ago

”bash” or actually ”bash$” as it is written in README is the prompt. The command should be: ./DockQ.py examples/model.pdb examples/native.pdb assuming DockQ is executable, otherwise: python ./DockQ.py examples/model.pdb examples/native.pdb should work.

Cheers Björn

On 18 Dec 2021, at 08:34, Yomna Jehad @.***> wrote:



I'm following the instructions on the readme file, I clones the repo, moved to its directory, run the make command then I'm trying to run the example provided as well. but when I do an error comes up. the example command: bash ./DockQ.py examples/model.pdb examples/native.pdb The error that shows up import-im6.q16: attempt to perform an operation not allowed by the security policy 'PS' @ error/constitute.c/IsCoderAuthorized/408. from: can't read /var/mail/Bio ./DockQ.py: line 6: syntax error near unexpected token 'ignore',' ./DockQ.py: line 6: 'warnings.simplefilter('ignore', BiopythonWarning)'

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