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bjornwallner / DockQ

DockQ is a single continuous quality measure for protein docked models based on the CAPRI evaluation protocol
MIT License
186 stars 46 forks source link

Trying to run Readme example, issues with make command #7

Closed chaotify3317 closed 2 years ago

chaotify3317 commented 2 years ago

When I am trying to run the Make command i am getting this: cc -O3 -funroll-loops -Isrc/ -c src/molecule.c -lm process_begin: CreateProcess(NULL, cc -O3 -funroll-loops -Isrc/ -c src/molecule.c -lm, ...) failed. make (e=2): The system cannot find the file specified. make: *** [Makefile:14: molecule.o] Error 2

chaotify3317 commented 2 years ago

UserWarning: mkl-service package failed to import, therefore Intel(R) MKL initialization ensuring its correct out-of-the box operation under condition when Gnu OpenMP had already been loaded by Python process is not assured. Please install mkl-service package, see http://github.com/IntelPython/mkl-service from . import _distributor_init Traceback (most recent call last): File "C:\Users\yspar\DockQ\DockQ.py", line 3, in import Bio.PDB File "C:\Users\yspar\anaconda3\lib\site-packages\Bio\PDB__init__.py", line 17, in from .PDBParser import PDBParser File "C:\Users\yspar\anaconda3\lib\site-packages\Bio\PDB\PDBParser.py", line 16, in raise MissingPythonDependencyError( Bio.MissingPythonDependencyError: Install NumPy if you want to use the PDB parser.

it also says this, although I have already installed Numpy.

chaotify3317 commented 2 years ago

Nevermind, I figured this out by simply updating my ubuntu.