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bjornwallner / DockQ

DockQ is a single continuous quality measure for protein docked models based on the CAPRI evaluation protocol
MIT License
185 stars 46 forks source link

PermissionError: [WinError 32] #9

Closed kristianwant closed 2 months ago

kristianwant commented 2 years ago

When i try to follow the example steps to check the installation is ok, the text file 'renumber_pdb' is just popping up on my screen.

I'm not sure why this popping up, and the program isn't running. Any help would be appreciated. (I'm trying to run the software on windows, in the Anaconda terminal)

kristianwant commented 2 years ago

Update: I just hadn't assigned the renumber_pdb.pl filetype to perl, so when run it was opening the text file as default. This is now fixed. The issue I'm now getting is:

Traceback (most recent call last): File "C:\Users\xxxx\Documents\ComputationalWork\Scripts\DockQ-1.0\DockQ.py", line 730, in main() File "C:\Users\xxxx\Documents\ComputationalWork\Scripts\DockQ-1.0\DockQ.py", line 567, in main native=make_two_chain_pdb_perm(native,nat_group1,nat_group2) File "C:\Users\xxxx\Documents\ComputationalWork\Scripts\DockQ-1.0\DockQ.py", line 454, in make_two_chain_pdb_perm os.remove(outfile)

PermissionError: [WinError 32] The process cannot access the file because this file is in use by another process: 'C:\Users\xxxx\AppData\Local\Temp\tmpkbs1gkir'

chaotify3317 commented 2 years ago

I also ran into this issue, what I originally did was try installing the tmp package, but that didn't work. So I just deleted all the DockQ files I had, ran an Ubuntu update, and reinstalled DockQ