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bjpop / methpat

A program for summarising CpG methylation patterns
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scale axes? so they are all comparable #9

Closed methylnick closed 10 years ago

methylnick commented 10 years ago

Great work Bernie, if you can incorporate percentage of total reads I think it would be comparable between amplicons, but it is possible to set the range of the axis for at least the raw data?

At the moment it is set to auto and to fill the entire space, it would be great to set the range if this is easy to do.

Thanks Bernie!

bjpop commented 10 years ago

I've added percentage scales in commit ab38ec123db5ce860e8dc201a05fb3e8cef313e8

These are "normalised" in the sense that the axis always 0-100.

The other axis units option is "absolute" which is just raw count. This is not normalised across the graphs because of the large variation in count between different amplicons.

Are you happy if just the percent scale is normalised?

methylnick commented 10 years ago

AWESOME AWESOME AWESOME. I think if you appease Alex with the colour change, I think brewer palette would be the way to go rather than just yellow and red