bjpop
commented
7 years ago Hi @burkesquires. Thanks for the bug report. Looks like a problem with the version of Python being used.
We don't use rubra anymore, since most of its useful parts became absorbed into Ruffus. Perhaps you might have better luck working with Ruffus directly, or having a look at some of the code we've written around it:
https://github.com/bjpop/pipeline_base And a trivial example: https://github.com/bjpop/test_ruffus_pipeline
Hello, I tried installing directly from pip and got the following errors:
pip install git+git://github.com/bjpop/rubra Collecting git+git://github.com/bjpop/rubra Cloning git://github.com/bjpop/rubra to /private/var/folders/d7/8vn6rd1d6f37gtgy_13h3b95mx3fmv/T/pip-fvxy0kg6-build Collecting ruffus==2.2 (from Rubra==0.1.5) Downloading ruffus-2.2.zip (5.9MB) 100% |████████████████████████████████| 5.9MB 115kB/s Complete output from command python setup.py egg_info: Traceback (most recent call last): File "", line 1, in
File "/private/var/folders/d7/8vn6rd1d6f37gtgy_13h3b95mx3fmv/T/pip-build-wo2ofvka/ruffus/setup.py", line 2, in
import ez_setup
File "/private/var/folders/d7/8vn6rd1d6f37gtgy_13h3b95mx3fmv/T/pip-build-wo2ofvka/ruffus/ez_setup.py", line 98
except pkg_resources.VersionConflict, e:
^
SyntaxError: invalid syntax
Command "python setup.py egg_info" failed with error code 1 in /private/var/folders/d7/8vn6rd1d6f37gtgy_13h3b95mx3fmv/T/pip-build-wo2ofvka/ruffus/