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bkntr / napari-brainways

Brainways UI plugin for napari
GNU General Public License v3.0
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Cannot import name 'dimensions' from 'aicsimageio' #29

Open iezqrom opened 1 week ago

iezqrom commented 1 week ago

Description

Describe what you were trying to get done. I was trying to install and run brainways in my computer as I've done in the past.

Tell us what happened, what went wrong, and what you expected to happen. I get an error with aicsimageio when I run brainways ui in 3.9, 3.10 and 3.12

What I Did

brainways ui


Traceback (most recent call last):
  File "/home/iezquer/miniforge3/envs/brainways/bin/brainways", line 5, in <module>
    from brainways.scripts.cli import cli
  File "/home/iezquer/miniforge3/envs/brainways/lib/python3.12/site-packages/brainways/scripts/cli.py", line 4, in <module>
    from brainways.scripts.cell_detection import cell_detection
  File "/home/iezquer/miniforge3/envs/brainways/lib/python3.12/site-packages/brainways/scripts/cell_detection.py", line 6, in <module>
    from brainways.project.brainways_project import BrainwaysProject
  File "/home/iezquer/miniforge3/envs/brainways/lib/python3.12/site-packages/brainways/project/brainways_project.py", line 15, in <module>
    from brainways.pipeline.brainways_pipeline import BrainwaysPipeline
  File "/home/iezquer/miniforge3/envs/brainways/lib/python3.12/site-packages/brainways/pipeline/brainways_pipeline.py", line 14, in <module>
    from brainways.project.info_classes import SliceInfo
  File "/home/iezquer/miniforge3/envs/brainways/lib/python3.12/site-packages/brainways/project/info_classes.py", line 12, in <module>
    from brainways.utils.io_utils.readers import QupathReader
  File "/home/iezquer/miniforge3/envs/brainways/lib/python3.12/site-packages/brainways/utils/io_utils/readers/__init__.py", line 6, in <module>
    from brainways.utils.io_utils.readers.qupath_reader import QupathReader
  File "/home/iezquer/miniforge3/envs/brainways/lib/python3.12/site-packages/brainways/utils/io_utils/readers/qupath_reader.py", line 12, in <module>
    from aicsimageio import dimensions, exceptions, transforms
ImportError: cannot import name 'dimensions' from 'aicsimageio' (/home/iezquer/miniforge3/envs/brainways/lib/python3.12/site-packages/aicsimageio/__init__.py)```
iezqrom commented 1 week ago

the issue is only with the latest version but not with 1.13.1

bkntr commented 6 days ago

Thank you for reporting this issue Ivan. I'll be away until 18th October and will look into it once I am back.

On Mon, Sep 30, 2024, 21:59 Ivan Ezquerra-Romano @.***> wrote:

the issue is only with the latest version but not with 1.13.1

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