Adds rules to generate simulated populations for influenza-like and coronavirus-like viruses with different recombination rates for the latter viruses. Tunes embedding parameters for each of these pathogen types with the simulated data and uses these tuned parameters for embeddings of the natural pathogen populations.
Adds rules to generate simulated populations for influenza-like and coronavirus-like viruses with different recombination rates for the latter viruses. Tunes embedding parameters for each of these pathogen types with the simulated data and uses these tuned parameters for embeddings of the natural pathogen populations.