Fix 2018-2020 seasonal flu workflow

blab / cartography

Dimensionality reduction distills complex evolutionary relationships in seasonal influenza and SARS-CoV-2

https://doi.org/10.1101/2024.02.07.579374

MIT License

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Fix 2018-2020 seasonal flu workflow #8

Closed huddlej closed 3 years ago

huddlej commented 3 years ago

This workflow needs rules to make HDBSCAN outputs that don't exist:

$ snakemake -np
Building DAG of jobs...
MissingInputException in line 21 of /Users/jlhudd/projects/cartography/seasonal-flu-nextstrain-2018-2020/Snakefile:
Missing input files for rule all:
results/full_HDBSCAN_metadata.csv
results/HDBSCAN_metadata_pca.csv
results/HDBSCAN_metadata_mds.csv
results/HDBSCAN_metadata_umap.csv
results/HDBSCAN_metadata_t-sne.csv

nandsra21 commented 3 years ago

I didn't realize I didn't remove these! I have pushed a change to fix this issue.