Automate recombinant lineages

blab / cartography

Dimensionality reduction distills complex evolutionary relationships in seasonal influenza and SARS-CoV-2

https://doi.org/10.1101/2024.02.07.579374

MIT License

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Automate recombinant lineages #81

Closed huddlej closed 6 months ago

huddlej commented 6 months ago

This PR updates the late SC2 workflow to automatically identify recombinant lineages from the official Pango designations and update recombinant distance results for the newly identified lineages.

Closes #77