blab / cartography

Dimensionality reduction distills complex evolutionary relationships in seasonal influenza and SARS-CoV-2
https://doi.org/10.1101/2024.02.07.579374
MIT License
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Cite additional related work #95

Closed huddlej closed 2 months ago

huddlej commented 2 months ago

Cite these as related works of non-phylogenetic methods (Kupperman et al. 2022) and automated lineage assignment tools (Lefrancq et a. 2023).

huddlej commented 2 months ago

After more thought, I couldn't find a logical place to mention the automated lineage assignment tools. Even though this project is similar in many ways to Lefrancq et al., it is more focused on the issues of reassortment and recombination and non-phylogenetic approaches to finding clusters.