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MERS-CoV spillover at the camel-human interface
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Analysis code #9

Closed trvrb closed 7 years ago

trvrb commented 7 years ago

The text states:

Sequence data and all analytical code is publicly available at https://github.com/blab/structured-mers.

This should be so before submitting the manuscript. Having a data/ directory is most important, but having analyses in place would also be very helpful.

maxbiostat commented 7 years ago

I'll get to work on cleaning up my seasonality scripts. This is the push I needed.

On 31 July 2017 at 16:22, Trevor Bedford notifications@github.com wrote:

The text states:

Sequence data and all analytical code is publicly available at https://github.com/blab/structured-mers.

This should be so before submitting the manuscript. Having a data/ directory is most important, but having analyses in place would also be very helpful.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/blab/structured-mers/issues/9, or mute the thread https://github.com/notifications/unsubscribe-auth/ACvey8PHHJ_3SRRNtVT_-WqLx2NeAlHCks5sTfEzgaJpZM4Ooi_- .

-- Luiz Max Fagundes de Carvalho PhD student, Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, United Kingdom. King's Buildings Campus, Ashworth Laboratories, Ash 2, office 2.08 https://www.researchgate.net/profile/Luiz_Carvalho11

evogytis commented 7 years ago

Yeah, I've been cleaning up the code and data.

evogytis commented 7 years ago

We got scripts largely figured out. Data file sizes remain an issue.

trvrb commented 7 years ago

@evogytis --- Did you get the files pushed to the repo? Or should I help with making an S3 bucket?

evogytis commented 7 years ago

Haven't pushed yet, no. I'll need to double check the files beforehand. I can put it on Dropbox and send you the link once it's done.

trvrb commented 7 years ago

Sounds great.

trvrb commented 7 years ago

MCC trees and .fasta sequences should be relative paths in the repo so that iPython notebooks can be run by someone who isn't @evogytis.