blab / ncov-forecasting-fit

Assessing accuracy of fitness model forecasts
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Fixing paths and refactoring #37

Closed marlinfiggins closed 6 months ago

marlinfiggins commented 6 months ago

Hello,

At some point, the paths were changed so the model_run notebook was not reading the new data nor was the data being read by the modelcomp_scores.py script. This caused errors where the new data sets were not being read. I've since fixed this.

I’ve updated the structure of the project and the scripts so that all estimates go into the estimates folder and all scores / errors go into the errors folder.

I've also swapped model_scores_output.csv to model_scores_output.tsv to decrease file size.

In the future, I think we should move towards more intuitive names for the files in this project. For example, model_scores_output.tsv to model_score.tsv and modelcomp_scores.py to compute_model_scores.py, but that will come in another PR.