Clade frequency mouse over is broken

[trvrb]

Not sure when this arose, but clade frequencies are no longer showing on mouseover.

[rneher]

it says "Error: Source data is missing a component at (0,1)!" I have had this before. did the json change?

[trvrb]

That's probably it. I reran the pipeline yesterday and pushed the updated json.

[trvrb]

But I think this means the current pipeline in master is producing incomplete json.

[rneher]

bernoulli_freqeuncies.py writes into genotype_frequencies.json, auspice loads frequencies.json could that be the issue?

[rneher]

the problem is that the tree doesn't contain a field 'pivots'. this should be a property of the root node. but it isn't. tree_util writes it, if it is there and should call the debugger if it fails.

[trvrb]

Thanks. I'll look into this tomorrow.

[rneher]

the first thing to check would be whether tree_frequencies.json has the "pivots" at the root node. If it does, the field got lost in streamlining.

[rneher]

should be fixed now. json export was broken by mishandling the virus_count field.

[trvrb]

Fixed by @rneher in c762dfe19f380fe69e4ddcf808961d16391f2b14.