NumbaDeprecationWarning with latest dependencies, as "nopython" argument is not supplied to numba.jit

blab / pathogen-embed

Create reduced dimension embeddings for pathogen sequences

https://pypi.org/project/pathogen-embed/

MIT License

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Closed nandsra21 closed 1 year ago

nandsra21 commented 1 year ago

calling "embed" causes 4 or 5 of the same deprecation warning before any other output is printed.

Possible fix:

import warnings
warnings.filterwarnings("ignore", message=".*The 'nopython' keyword.*")

fix idea from here

huddlej commented 1 year ago