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blachlylab / dhtslib

D bindings and OOP wrappers for htslib
MIT License
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Bai index warning sometimes unnecessary #100

Closed charlesgregory closed 3 years ago

charlesgregory commented 3 years ago

This warning is reported anytime a SAMReader is opened on a sam file or a bam file without an index. We should consider only retrieving an index when the query methods are used. So that this error is not issued when a index is not being used. 

[E::idx_find_and_load] Could not retrieve index file for 'test.bam'
jblachly commented 3 years ago

agree; plus it should be a warning not an error