Better estimate on mate region size

blachlylab / fade

Fragmentase Artifact Detection and Elimination

MIT License

11 stars 3 forks source link

Closed charlesgregory closed 5 years ago

charlesgregory commented 5 years ago

https://github.com/blachlylab/fade/blob/ed6d43a3880d18a56d3f587c77a48e67128b5bde/source/app.d#L141 Currently we just estimate the mate region to be 151 bases as expected for Illuminia. Either make this configurable or at least make the guess smarter. Could we get mate cigar?

charlesgregory commented 5 years ago

This is no longer an issue as further versions of fade do not check the mate region.