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blachlylab / mucor

GNU General Public License v3.0
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BAM files in config should go in files block #1

Closed jblachly closed 8 years ago

jblachly commented 8 years ago

bam object should be another element in files array with type BAM ; mucor should ignore all type BAM

{ "bam": [ { "path": "project/dir1/sample1.bam" } ], "files": [ { "path": "project/dir1/sample1-a.vcf", "snpeff": false, "source": "VarScan", "type": "vcf" },

kwkroll32 commented 8 years ago

bam files and vcf files live harmoniously under the respective sample block.