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blachlylab / mucor

GNU General Public License v3.0
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FEATURE REQUEST: support for varscan txt output #11

Open die4live opened 7 years ago

die4live commented 7 years ago

As in varscan's default txt output, there are more stats info including filtering for high confident variants, that would be helpful for mucor to support this input format like it supports mutect's txt output. Thanks!

jblachly commented 7 years ago

Thanks, we will certainly try to write a quick input module for this.

jblachly commented 7 years ago

@die4live Can you upload some examples somewhere so we can make sure this is working?

die4live commented 7 years ago

@jblachly Sure, for VarScan v2.4, germline.snp.filter.txt somatic.snv.filter.txt