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blachlylab / mucor3

Parses VCF data into tabular spreadsheets and aggregates data by sample
MIT License
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review of outputs #6

Open charlesgregory opened 3 years ago

charlesgregory commented 3 years ago

We currently output an AF.tsv, DP.tsv, master.tsv, and Variants.tsv. AF and DP are VAF and depth pivot tables. master.tsv is the raw dataset (post-filtering). Variants.tsv is the master dataset that is merged on CHROM,POS, REF, and ALT. This makes it easier to see variants across samples.

Other outputs to be considered?

jblachly commented 3 years ago

I cannot think of anything else, except maybe a normalized version of DP that was scaled (i.e. not just raw depth)