Does assemblotron find the true optimum? - Githubissues

blahah / assemblotron-paper

Paper for Assemblotron

MIT License

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Does assemblotron find the true optimum? #2

Open blahah opened 9 years ago

blahah commented 9 years ago

Experiment:

[ ] take a set of long-ish paired-end reads from a published rnaseq experiment in a model organism
[ ] reduce the parameter space for soapdt down to use just a few parameters (k, d, e)
[ ] assemblotron without subsampling on the full set of reads
[ ] assemblotron with subsampling
[ ] plot both results