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blahah / transrate

Understand your transcriptome assembly
http://hibberdlab.com/transrate
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Example command doesn't work #192

Closed simonvh closed 8 years ago

simonvh commented 8 years ago 
$ transrate --examples
[...]
# check dependencies and install any that are missing
transrate --install-deps all
[...]

when I try this, this results in the following message:

$ transrate --install-deps all
[ERROR] 2016-04-13 10:24:44 : install-deps all is not valid. You must specify one of: ref.

This using transrate-1.0.2-linux-x86_64.

blahah commented 8 years ago

Thanks for reporting this - the reason this doesn't work is that the dependencies are already installed. We need to make that clear in the message.

blahah commented 8 years ago

@simonvh we've made the --install-deps instructions clearer both on the website and in the --help message for v1.0.3. Thanks again for reporting this.