Error in snap beta installation

lplough commented 8 years ago

There seems to be something up with the install of snap (1.0beta.18) as a dependcy:

$> transrate --install-deps all Checking dependencies Installing snap (1.0beta.18)... [ERROR] 2016-08-03 14:52:30 : Failed to install:

snap:1.0beta.18

Downstream, the read based assembly metrics routine fails because snap is not installed. This is the actual problem of course. Interestingly, I actually already have snap installed, so, Im not sure why Transrate cant find/see it. snap is in my path, in multiple places. e.g. Dependencies are missing:

snap (1.0beta.18) To install all missing dependencies, run: transrate --install-deps all If you only want the read-metrics dependencies: transrate --install-deps read Or if you only want the reference-metrics dependencies: transrate --install-deps ref

I am wondering if transrate is looking for the 1.0beta.18 or some other name beyond the 'snap-aligner' executable? I could simply rename the snap executable if I knew what Transrate was looking for.

blahah commented 8 years ago

how did you install transrate? using the binary install or the ruby gem?

lplough commented 8 years ago

With ruby first. Then with the binary... Should I remove all instances of the install?

blahah / transrate

Error in snap beta installation #200