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blahah / transrate

Understand your transcriptome assembly
http://hibberdlab.com/transrate
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Install transrate in docker image of ubuntu 16.04 / salmon:0.4 error #203

Closed chklopp closed 7 years ago

chklopp commented 8 years ago

Hi,

I'm trying to install transrate in a docker image of ubuntu 16.04.

Here are the commands I use : apt-get install ruby-dev ruby make gcc gem install transrate transrate --install-deps all

The last installation instruction reports an error : root@1a9ab23c5cdd:/# transrate --install-deps all Checking dependencies Installing snap (1.0beta.18)... Installing bam-read (1.0.0)... Installing salmon (0.4)... Installing blastplus (2.2.[0-9])... [ERROR] 2016-09-30 11:51:47 : Failed to install:

Any idea how to make this work?

nktsk commented 7 years ago

Hi,

I am having the same problem. I've installed salmon 0.6.0 and the latest version 0.7.2, both added to my PATH, but cant get transrate to locate them. Did you manage to sort it out?

Cheers,

PD: Found the solution on the chat (remove the /.local/bin/librt.so.1 ). Thanks !!!

chklopp commented 7 years ago

We succeeded installing transrate in docker. Here is our docker file. http://www.sigenae.org/drap/lib/src/Dockerfile

Ch+