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blahah / transrate

Understand your transcriptome assembly
http://hibberdlab.com/transrate
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After installing transrate via ruby showing syntex errror #205

Closed hackerzone85 closed 7 years ago

hackerzone85 commented 7 years ago 
blab:~$ transrate --help
/usr/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require': /var/lib/gems/1.9.1/gems/transrate-1.0.1/lib/transrate/transrater.rb:23: syntax error, unexpected tLABEL (SyntaxError)
    def initialize(assembly, reference, threads: 1)
                                                ^
/var/lib/gems/1.9.1/gems/transrate-1.0.1/lib/transrate/transrater.rb:119: syntax error, unexpected keyword_end, expecting $end
end # Transrate
   ^
    from /usr/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
    from /var/lib/gems/1.9.1/gems/transrate-1.0.1/lib/transrate.rb:30:in `<top (required)>'
    from /usr/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
    from /usr/lib/ruby/1.9.1/rubygems/custom_require.rb:36:in `require'
    from /var/lib/gems/1.9.1/gems/transrate-1.0.1/bin/transrate:2:in `<top (required)>'
    from /usr/local/bin/transrate:23:in `load'
    from /usr/local/bin/transrate:23:in `<main>'
blahah commented 7 years ago

transrate is only compatible with ruby v2 and above as specified in the installation documentation

We provide some instructions for upgrading ruby on that page too :)