SNAP error - Githubissues

blahah / transrate

Understand your transcriptome assembly

http://hibberdlab.com/transrate

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SNAP error #232

Open zolotarovgl opened 4 years ago

zolotarovgl commented 4 years ago

Hi, I tried to use transrate for the transcriptome assembled by trinity. However, SNAP fails with the following error message: Ran out of scoring candidate pool entries. Perhaps trying with a larger value of -mcp will help. SNAP exited with exit code 1 from line 490 of file SNAPLib/IntersectingPairedEndAligner.cpp I would be very grateful for any help with this.

rafinhacp commented 4 years ago

I had the same problem and while looking for a solution, I ran into this: https://github.com/blahah/transrate/issues/204

I haven't tried yet, but it might help you too.