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blahah / transrate

Understand your transcriptome assembly
http://hibberdlab.com/transrate
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merge assemblies #246

Open ewelinarubin opened 1 year ago

ewelinarubin commented 1 year ago

I noticed that transrate might have the ability to merge assemblies. I have fasta files from 10 individual assemblies -- is there a way to merge all ten? If yes, what is the correct syntax for that command, how to list the fasta files? I tried the following, but it did not work

transrate --threads 32 --merge-assemblies --assembly 1A.fa,1D.fa, ... ..

blahah commented 1 year ago

--merge-assemblies merged.fa --assembly 1.fa,2.fa