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Understand your transcriptome assembly
http://hibberdlab.com/transrate
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salmon: error while loading shared libraries #247

Open Liyong-Zhang opened 1 year ago

Liyong-Zhang commented 1 year ago

Hello,

I am using TransRate (v1.0.3), which installed through conda (https://anaconda.org/bioconda/transrate) on a Linux machine.

When I try to run transrate --assembly transcriptome.fa --left P1.fa --right P2.fa --threads 32, I got the following error: Dependencies are missing: - salmon (0.6.0)

While when I check the conda list, it shows salmon (0.6.0) was there: salmon 0.6.0 1 bioconda

When I cd to conda/env/bin and call salmon directly (./salmon), it shows error: salmon: error while loading shared libraries: libtbb.so.12: cannot open shared object file: No such file or directory

Any idea how I could fix this? Thanks a lot.

eggrandio commented 1 year ago

I "fixed" this issue by installing transrate with mamba instead of conda.

mamba install -c bioconda transrate

I hope this works for you.