(ERR): Expected bowtie2 to be in same directory with bowtie2-align:

bli25 / RSEM_tutorial

A short tutorial on how to use RSEM

GNU General Public License v3.0

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(ERR): Expected bowtie2 to be in same directory with bowtie2-align: #2

Open NavchetanKaur opened 5 years ago

NavchetanKaur commented 5 years ago

When I run this command, I run into the following error software/RSEM-1.2.25/rsem-calculate-expression -p 8 --paired-end --bowtie2 --bowtie2-path software/bowtie2-2.2.6 --estimate-rspd --append-names --output-genome-bam data/CTR_1_1.fastq data/CTR_1_2.fastq ref/human_ref exp/car

sh: samtools: command not found (ERR): Expected bowtie2 to be in same directory with bowtie2-align: