blobtoolkit pipeline issues

blobtoolkit / pipeline

[Archived] SnakeMake pipeline to run BlobTools on public assemblies

https://blobtoolkit.genomehubs.org

MIT License

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issues

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Error: NCBI C++ Exception: Error: (CSerialException::eOverflow) byte 84: overflow error ( at [].[].gi) Error: (CSerialException::eOverflow) ncbi::CMemberInfoFunctions::ReadWithSetFlagMember() - error while reading seqid ( at Blast-def-line-set.[].[].seqid.[].[].gi)

#27 ChathumadaviE closed 1 year ago
3
Pipeline fails: no Snakefile found, replaceHits error (v2.6.5)

#26 gabbycoffing closed 1 year ago
2
Snail Plot (Busco error)

#25 Glenn032787 closed 2 years ago
4
Error: NCBI C++ Exception in blastn step

#24 Glenn032787 closed 2 years ago
3
Downloading uniprot databse

#23 Glenn032787 closed 2 years ago
4
cannot filter-AttributeError: 'bool' object has no attribute 'values'

#22 maysonlin closed 1 year ago
3
view step sometimes generates empty blob.circle.png

#21 rjchallis closed 1 year ago
0
read mapping should use CRAM format

#20 rjchallis closed 1 year ago
0
Running on local assembly still a bit ambiguous

#19 photocyte closed 1 year ago
2
chunk_fasta.py "fails" when running outside of snakemake

#18 OKersten closed 3 years ago
1
[v2.6.1] run_blobtools_create dies; possible latency issue?

#17 kubu4 closed 3 years ago
3
[v2.6.1] BUSCO "KeyError" 'download_dir'

#16 kubu4 closed 3 years ago
6
KeyError: run_busco_v5

#15 jgnunes closed 3 years ago
5
[v2.6.1] Snakemake TypeError: '>' not supported between instances of 'int' and 'str'

#14 kubu4 closed 3 years ago
2
[v2.6.0] Windowmasker KeyError in line 6 of unzip_assembly_fasta.smk

#13 kubu4 closed 3 years ago
2
Extract_busco_genes and chunk_fasta (v2.5)

#12 OKersten closed 3 years ago
2
Max-target-seqs and evalue parameters (v2.5)

#11 OKersten closed 3 years ago
3
--configfile directory getting truncated? (v2.5)

#10 kubu4 closed 3 years ago
1
Error: Missing input files for rule run_diamond_blastx_chunks

#9 kubu4 closed 3 years ago
6
Local pipeline fails without internet access

#8 kubu4 closed 3 years ago
4
Documentation: No snake_env in install instructions

#7 kubu4 closed 3 years ago
4
Running pipeline locally crashes at generate_metadata - preceding steps seem erroneous

#6 alimayy closed 2 years ago
2
BlobToolKit Viewer link doesn't load

#5 kmmahan closed 4 years ago
0
running pipeline locally with singularity (or docker)

#4 alxsimon closed 4 years ago
12
"pool" error with blastn

#3 photocyte closed 4 years ago
2
regex was missing a +

#2 photocyte closed 4 years ago
1
Can't have "." in assembly prefix

#1 photocyte closed 4 years ago
2