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blobtoolkit / viewer

[Archived] BlobToolKit API and viewer code
http://blobtoolkit.genomehubs.org
MIT License
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Not URL in the output file #19

Closed Alonso-Garcia closed 1 year ago

Alonso-Garcia commented 3 years ago

Hello, I have run Blobtool in a remote server. Everything worked fine, but when I tried to open my dataset in the viewer, something failed: the analysis seems not to finish (is it normal that it takes more than 2 hours?) and the output file does not include the URL.

This is my script: 

//prg/blobtools/2/blobtools2/blobtools view \
    --remote ~/V_C/DNA/05_BlobDir/518_DNA_BlobDir

and this is like the output looks:

Initializing viewer |                                        | 0/15 seconds
Initializing viewer |██▋                                     | 1/15 seconds
Initializing viewer |█████▎                                  | 2/15 seconds
Initializing viewer |████████                                | 3/15 seconds
Initializing viewer |██████████▋                             | 4/15 seconds
Initializing viewer |█████████████▎                          | 5/15 seconds
Initializing viewer |████████████████                        | 6/15 seconds
Initializing viewer |██████████████████▋                     | 7/15 seconds
Initializing viewer |█████████████████████▎                  | 8/15 seconds
Initializing viewer |████████████████████████                | 9/15 seconds
Initializing viewer |██████████████████████████             | 10/15 seconds
Initializing viewer |████████████████████████████▌          | 11/15 seconds
Initializing viewer |███████████████████████████████▏       | 12/15 seconds
Initializing viewer |█████████████████████████████████▊     | 13/15 seconds
Initializing viewer |████████████████████████████████████▍  | 14/15 seconds
Initializing viewer |███████████████████████████████████████| 15/15 seconds
Initializing viewer |███████████████████████████████████████| 15/15 seconds

Do you know what I'm doing wrong? Thanks for your help and for the software! :) Marta

github-actions[bot] commented 1 year ago

This issue has being marked as dormant because viewer is being archived. The code is now part of the main BlobToolKit repository.

If you feel the issue has not been resolved, please follow the updated BlobToolKit installation instructions to first confirm that you are using the latest version, and then open a new issue at the main BlobToolKit repository if necessary.

This issue will be automatically closed in 7 days.

github-actions[bot] commented 1 year ago

This issue was closed because it has been inactive for 7 days since being marked as dormant.