bluegenes / MakeMyTranscriptome

assemble, annotate, and assess transcriptomes in a single step
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run params in masterlog #21

Closed bluegenes closed 8 years ago

bluegenes commented 8 years ago

Update masterlog to include parameters for each run

bluegenes commented 8 years ago

current master log is pretty much for us: what tasks were executed; which were re-run vs recycled, etc. What we need for the user is a log of task: date/time executed + location of the full command used.

file format:

run command: mmt full -test --cpu 12 --other-options-used

current databases:

Database Name Download Date
database_1 download date
database_2 download_date

tools run:

Tool Version Date/Time Run WallTime to Run Path to log file
tool1 tool1_version datetime_run clock_runtime path_to_log_file
tool2 tool2_version datetime_run clock_runtime path_to_log_file