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bluegenes / MakeMyTranscriptome

assemble, annotate, and assess transcriptomes in a single step
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manage databases: modifications #25

Closed bluegenes closed 8 years ago

bluegenes commented 8 years ago

Low priority, but imp:

  1. change default behavior of manage_databases:
    • change default functionality--> check available databases, install any missing db's
    • make "--update" an option instead (currently default)
  2. make manage_db a module, so can call with: "mmt databases" instead of having to use ./scripts/manage_databases.py
  3. option for which busco db to download (to go with our current option in pipeline.py)