cds. handling (diamond /blast compatibility)

bluegenes / MakeMyTranscriptome

assemble, annotate, and assess transcriptomes in a single step

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Closed bluegenes closed 8 years ago

bluegenes commented 8 years ago

For blastP outputs + parsing (swissprot blastP; PFAM):

handle cds. on ID as possibility (appears with diamond-blast, not with blast+)
- if 'cds.' in string: cut it