Quality module dev - Githubissues

bluegenes / MakeMyTranscriptome

assemble, annotate, and assess transcriptomes in a single step

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Closed bluegenes closed 8 years ago

bluegenes commented 8 years ago

Refactor:

now five modules (added quality; turned manage_databases into a module)
each module now has -test flag for simple testing
manage-db now defaults to checking for existing databases, downloading only if they don't exist
salmon was fully integrated
assembly_scrape v0.1 added