search

bluegenes / MakeMyTranscriptome

assemble, annotate, and assess transcriptomes in a single step
Other
9 stars 5 forks source link

random subset memory usage #6

Closed bluegenes closed 8 years ago

bluegenes commented 8 years ago

check memory usage of random_subset.py; reduce if necessary

bluegenes commented 8 years ago

~108GB used with msEye reads.

consider using seqtk instead.

bluegenes commented 8 years ago

py2 zip creates list, not iterator --> high memory. Fixed (replaced with iterator method)