diamond: annotation table

bluegenes / MakeMyTranscriptome

assemble, annotate, and assess transcriptomes in a single step

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Closed bluegenes closed 8 years ago

bluegenes commented 8 years ago

move NR "best words" /query coverage calculation --> main annotation table script calculate query coverage = (alignment length/ query length)

alignment length = index [3] in the blast file
query length = from input fasta
"name" /words can come from index 12 - Tessa will extend the diamond blast output to contain this field