Thumper: One of the types of stills used to accomplish the second distillation of American whiskey. It effectively removes impurities and concentrates the alcohol even further. “Low wines” go in; “high wines” come out. Thumpers differ from doublers in that the low wines enter a thumper as vapors that are bubbled through water, causing the stills to make a thumping sound; a doubler makes no distinctive noise since the low wines enter in condensed, liquid form.
% thumper run demo/demo.yaml
Building DAG of jobs...
MissingInputException in line 206 of /Users/t/dev/thumper/thumper/thumper.snakefile:
Missing input files for rule genome_search:
/home/ntpierce/2020-gtdb-smash/gtdb-lineages.rna-filenames.with-signames.csv
Error in snakemake invocation: Command '['snakemake', '-s', '/Users/t/dev/thumper/thumper/thumper.snakefile', '--use-conda', '--conda-frontend', 'mamba', '-j', '1', '--printshellcmds', '--configfiles', '/Users/t/dev/thumper/thumper/.config/config.yaml', '/Users/t/dev/thumper/thumper/.config/databases.yaml', '/Users/t/dev/thumper/thumper/.config/pipelines.yaml', 'demo/demo.yaml']' returned non-zero exit status 1.
It looks like we need gtdb-lineages.rna-filenames.with-signames.csv.
bluegenes
commented
3 years ago
It looks like we need
gtdb-lineages.rna-filenames.with-signames.csv.