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bluenote-1577 / flopp

flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.
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No output inferred result #11

Closed masterzhen119 closed 1 year ago

masterzhen119 commented 1 year ago

Given the following fragment file: 19floppy.txt . I used the command: /home/project11/flopp/target/release/flopp -f /home/project11/Formal_simulation_SNV/New_generation_SNV_g3/Floppy_result/301/50/19_floppy_.txt -p 3 -o /home/project11/Formal_simulation_SNV/New_generation_SNV_g3/Floppy_result/301/50/unpolished_results.txt There is no output. However the simulation setting of number of haplotypes is 3. The result is as follows: Time taken reading inputs 50.607107ms Median read length is 1525 SNPs Binomial adjustment factor is 61 Length of genome is 5589 SNPs Length of each block is 0 SNPs thread 'main' panicked at 'attempt to divide by zero', src/bin/flopp.rs:326:29 note: run with RUST_BACKTRACE=1 environment variable to display a backtrace.

How to fix it? Since it is fine with AltHap.

bluenote-1577 commented 1 year ago

I just pushed a new fix fixing this issue.

The issue was that some of your fragments have 0 length, so flopp panics when too many of them > 33% of them have 0 length.

Let me know if it works.

masterzhen119 commented 1 year ago

I just pushed a new fix fixing this issue.

The issue was that some of your fragments have 0 length, so flopp panics when too many of them > 33% of them have 0 length.

Let me know if it works.

Thanks！ It works now！