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bluenote-1577 / sylph

ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
MIT License
136 stars 6 forks source link

ITS profiling? #13

Closed mthang closed 2 months ago

mthang commented 2 months ago

Can sylph profile ITS dataset? I downloaded the UNITE fasta file and converted it to the syldb. Then, I tested this tool with some ITS dataset and didnt get any luck to get some outputs. Thanks

bluenote-1577 commented 2 months ago

Unfortunately, sylph doesn't work with its or 16s sequences, only whole genome.