search

bm2-lab / PanPep

GNU General Public License v3.0
42 stars 9 forks source link

Installation issue #6

Closed maheshworpaudel5001 closed 12 months ago

maheshworpaudel5001 commented 1 year ago

Hi, I do not see a setup.py file. So, I do not know how do I install it properly in a virtual environment using Conda.

I tried git cloning it. But it complained me of some of the modules that were not installed, which I installed. However, it has been complaining me of other errors of files not being found.

Here is the snippet of what I am through: (panpep) [mxp140@r1pl-hpcf-h03 ~]$ python PanPep/PanPep.py --learning_setting zero-shot --input PanPep/Data/Example_zero-shot.csv --output PanPep/Output/i_just_ran_0_shot_output.csv Traceback (most recent call last): File "/gpfs0/home1/gddaslab/mxp140/PanPep/PanPep.py", line 29, in aa_dict = joblib.load("./Requirements/dic_Atchley_factors.pkl") File "/home/gddaslab/mxp140/anaconda3/envs/panpep/lib/python3.9/site-packages/joblib/numpy_pickle.py", line 650, in load with open(filename, 'rb') as f: FileNotFoundError: [Errno 2] No such file or directory: './Requirements/dic_Atchley_factors.pkl'

maheshworpaudel5001 commented 1 year ago

I have worked out the installation.