bm2-lab / scLearn

scLearn:Learning for single cell assignment
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how to get the accuracy that you provided in the paper #9

Closed whateverxzy closed 3 years ago

whateverxzy commented 3 years ago

Dear authors, When I ran the codes that you shared in the github, what I got are as follows: "[1] "The number of missing features in the query data is 79 " [1] "The rate of missing features in the query data is 0.0671768707482993 "' and the reference dataset is deng-reads.rds, the query dataset is zeisel.rds. But I can't get the accuracy that you provided in the papers. Like this "deng_zeisel scLearn 0.996" Is something missing when I ran the codes. I will appreciate it if you can helo me out of this. Thank you for your time.

BinDuan commented 3 years ago

Dear authors, When I ran the codes that you shared in the github, what I got are as follows: "[1] "The number of missing features in the query data is 79 " [1] "The rate of missing features in the query data is 0.0671768707482993 "' and the reference dataset is deng-reads.rds, the query dataset is zeisel.rds. But I can't get the accuracy that you provided in the papers. Like this "deng_zeisel scLearn 0.996" Is something missing when I ran the codes. I will appreciate it if you can helo me out of this. Thank you for your time.

We didn't offer the code to calculate accuracy, because it wasn't our purpose. Besides, it is easy to calculate accuracy, because it is a common used metric. You can write the code to calculate "accuracy" by yourself or load other R package to calculate it