bmansfeld
commented
5 years ago Hey Allesandro, Thanks for the feedback! I'm guessing the error is due to some formatting of the x axis.. I wasn't anticipating users in yeast or other organisms with smaller genomes (I'm a plant guy). If you send me your data I could take a look to understand why it breaks the code. I have some ideas but it's hard to be sure with out an example. In any case you really don't need for me to solve this for you. plotQTLStats is just a wrapper for ggplot and all the data for plotting exists in your data_filt dataframe. So you can reproduce the plots manually using that. Ben
Hi Ben,
I am new user of QTLseqr, but it seems a really nice package!! Congrats!! However, I got an error when trying to plot graphs from plotQTLstat as described above.
p2 <- plotQTLStats(SNPset = data_filt, var = "deltaSNP", plotIntervals = TRUE) p2 Error in f(..., self = self) : Breaks and labels are different lengths In addition: Warning message: In x/limits[i] : longer object length is not a multiple of shorter object length
I am trying to plot a yeast QTL analysis having 16 chromossomes with distinct sizes. By using subset() and manualy adding the chromossomes I figured out that I got the graph when I exclude the two majors chromossomes > 1Mb. So seems the error happens when one of these "large" chromossomes is on my plot.
Do you know how to fix it? Sorry if the question sounds idiot.
Best,
Alessandro