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bmansfeld / QTLseqr

QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis
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argument 'x' contains missing values #48

Closed Nikhilasai1223 closed 2 years ago

Nikhilasai1223 commented 3 years ago

df_filt <- runGprimeAnalysis(df_filt,

  • windowSize = 1e6,
  • outlierFilter = "deltaSNP",
  • filterThreshold = 0.1) Counting SNPs in each window... Calculating tricube smoothed delta SNP index... Calculating G and G' statistics... Using deltaSNP-index to filter outlier regions with a threshold of 0.1 Estimating the mode of a trimmed G prime set using the 'modeest' package... Error: argument 'x' contains missing values I encountered the above error. Please help.
bmansfeld commented 3 years ago

Sorry I missed this issue. If you are still having problems let me know and we can try to work it out. I will need more information than what you supplied to try to figure it out. Ben