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bmeg / bmeg-etl

ETL configuration for BMEG
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Create Diagnosis Vertex #316

Closed adamstruck closed 1 year ago

adamstruck commented 5 years ago

Diagnosis should be factored out of gdc_attributes on Cases.

adamstruck commented 5 years ago

CCLE Aliquots currently link to Phenotype vertices (no other Aliquots do). Example phenotype:

{
  "_id": "Phenotype:TODO:Melanoma",
  "gid": "Phenotype:TODO:Melanoma",
  "label": "Phenotype",
  "data": {
    "term_id": "TODO:Melanoma",
    "term": "TODO",
    "name": "Melanoma"
  }
}

These should probably be redefined as Case -> Diagnosis relationships and they should be generated for the other Programs as well.

adamstruck commented 5 years ago

We also need to distinguish between Diagnosis and Phenotype vertices.