bmeg / bmeg-etl

ETL configuration for BMEG
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Not for merge: Adds work in progress analysis of CDA data sources. #363

Closed bwalsh closed 11 months ago

bwalsh commented 4 years ago

Adds work in progress to harvest and create ad-hoc graphs for:

Includes dvc checkin of graph images and tar file containing:

cda-datasets/
cda-datasets/gdc/
cda-datasets/gdc/gdc.Compound.Vertex.json.gz
cda-datasets/gdc/Project_Cases_Case.Edge.json.gz
cda-datasets/gdc/Case.Vertex.json.gz.1
cda-datasets/gdc/Project_Samples_Sample.Edge.json.gz
cda-datasets/gdc/gdc.Project_Compounds_Compound.Edge.json.gz
cda-datasets/gdc/Sample_Aliquots_Aliquot.Edge.json.gz
cda-datasets/gdc/Sample_Projects_Project.Edge.json.gz
cda-datasets/gdc/gdc.Compound_Projects_Project.Edge.json.gz
cda-datasets/gdc/cases.dvc
cda-datasets/gdc/.gitignore
cda-datasets/gdc/gdc.Case_Compounds_Compound.Edge.json.gz
cda-datasets/gdc/Sample_Case_Case.Edge.json.gz
cda-datasets/gdc/Case.Vertex.json.gz
cda-datasets/gdc/gdc.Compound_Cases_Case.Edge.json.gz
cda-datasets/gdc/Case_Samples_Sample.Edge.json.gz
cda-datasets/gdc/Program.Vertex.json.gz
cda-datasets/gdc/Aliquot.Vertex.json.gz
cda-datasets/gdc/Sample.Vertex.json.gz
cda-datasets/gdc/Program_Projects_Project.Edge.json.gz
cda-datasets/gdc/Case_Projects_Project.Edge.json.gz
cda-datasets/gdc/Project.Vertex.json.gz
cda-datasets/gdc/Project_Programs_Program.Edge.json.gz
cda-datasets/gdc/compounds.dvc
cda-datasets/gdc/Project_Aliquots_Aliquot.Edge.json.gz
cda-datasets/gdc/Aliquot_Projects_Project.Edge.json.gz
cda-datasets/gdc/Aliquot_Sample_Sample.Edge.json.gz
cda-datasets/tcia/
cda-datasets/tcia/series.json
cda-datasets/tcia/patient_study.json
cda-datasets/tcia/patients.json
cda-datasets/pdc/
cda-datasets/pdc/allCases.json
cda-datasets/pdc/allPrograms.json
cda-datasets/pdc/biospecimenPerStudy.json
cda-datasets/pdc/filesPerStudy.json
cda-datasets/pdc/allStudies.json