RC7

[kellrott]

• [ ] allele
  • [ ] Need CCLE alleles
  • [ ] Need G2P alleles
• [ ] celllines
• [ ] ctrp
• [ ] ensembl
• [ ] gdsc
• [ ] mc3
  • [ ] DELETE (replaced with GDC MAF files)
• [x] normalize (deleted)
• [ ] pharmacodb
• [x] publication
  • [x] Review and DELETE
• [ ] callsetSummary
• [ ] chembl
• [ ] dgidb
• [ ] g2p
  • [ ] Plans for updates
• [ ] go
  • [ ] Needs review
• [ ] mondo
• [ ] pathway_commons
• [ ] phenotype
  • [ ] Old merger step, review for deletion
• [ ] pubmed
• [ ] ccle
  • [ ] review for deletion (replaced with depmap?)
• [ ] compound
  • [ ] Delete and replace with chembl transform?
• [ ] gdc
  • [ ] Review
  • [ ] Compound information/linkage
• [ ] gtex
  • [ ] Case converter
  • [ ] Sample converter
  • [x] Gene level TPM
  • [ ] Transcript level TPM
• [ ] msigdb
• [ ] pfam
  • [ ] Review for deletion and replace with interpro transform
• [ ] prism
  • [x] Write download script
  • [x] Write level one transform
  • [x] Write level two transform
  • [ ] Link to Depmap cellline data
• [x] tcga
  • [x] DELETE