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bmeg / bmeg-etl

ETL configuration for BMEG
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Add schema to repo #391

Closed teslajoy closed 6 months ago

teslajoy commented 7 months ago
teslajoy commented 6 months ago

Citation for publication reference https://build.fhir.org/citation.html possibly only need Citation, CitationCitedArtifact, and CitationCitedArtifactWebLocation example: 

from fhir.resources.citation import Citation, CitationCitedArtifact, CitationCitedArtifactWebLocation

cit = CitationCitedArtifactWebLocation(**{'resource_type':'CitationCitedArtifactWebLocation', 'id': "1234", "classifier":[{
        "coding" : [{
          "system" : "http://hl7.org/fhir/artifact-url-classifier",
          "code" : "doi-based",
          "display" : "DOI Based"
        }]
      }], "url" : "https://doi.org/00.0000/123345"})

citation = Citation(**{ "id": "18426954", "identifier": [{"value": "18426954", "system": "https://pubmed.ncbi.nlm.nih.gov/"}], "status": "active", "citedArtifact": CitationCitedArtifact(**{"webLocation": [cit]})})

citation.json()

# {"resourceType":"Citation","id":"18426954","identifier":[{"system":"https://pubmed.ncbi.nlm.nih.gov/","value":"18426954"}],"status":"active","citedArtifact":{"webLocation":[{"id":"1234","classifier":[{"coding":[{"system":"http://hl7.org/fhir/artifact-url-classifier","code":"doi-based","display":"DOI Based"}]}],"url":"https://doi.org/00.0000/123345"}]}}