bnprks / BPCells

Scaling Single Cell Analysis to Millions of Cells
https://bnprks.github.io/BPCells
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Add AnnData dense matrix read support #146

Open bnprks opened 4 weeks ago

bnprks commented 4 weeks ago

This addresses old issues #17 and #36 by adding support for reading the AnnData dense matrix format.

Changes:

The first commit is the main one to look at for review, the others are moving around code mostly.

bnprks commented 3 weeks ago

As discussed offline, another to-do item is filtering out explicit zeros while reading from a dense matrix