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boaz85 / pymuller

Muller plot generation in Python
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color_by argument #3

Open allmanbrent opened 2 years ago

allmanbrent commented 2 years ago

hello, could you please add an example of what the color_by object should look like? I attempted this color_by = pd.Series([.1,.2,.3,.4,.5], index = [' GGTA', ' GGTT',' GACA', ' AACA', ' AATA']). So what are the values of color_by supposed to be? I keep getting errors. Most recent one is TypeError: ufunc 'isfinite' not supported for the input types, and the inputs could not be safely coerced to any supported types according to the casting rule ''safe''

My adjacency matrix looks like 

adjacency_mat
  Parent Identity
1   GGTA     GGTT
2   GGTA     GACA
3   GGTA     AACA
4   GGTA     AATA

and my population matrix looks like 

Generation Identity  Population
0          28     GGTA    0.969828
1          39     GGTA    0.000000
2          53     GGTA    0.000000
3          75     GGTA    0.068991
4          28     GGTT    0.001078
5          39     GGTT    0.000000
6          53     GGTT    0.000000
LukasHafner commented 1 year ago

Issue is persisting. Have you found a solution @allmanbrent ?

allmanbrent commented 1 year ago

No, I have not. Sadly I had to move on to a different visualization solution because I couldn't figure this out. Instead, I just went with a scatter plot, some text description, and an accompanying cartoon.

Entropy5 commented 11 months ago

added an example good luck https://github.com/boaz85/pymuller/pull/4