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bobeobibo / phigaro

Phigaro is a scalable command-line tool for predicting phages and prophages
MIT License
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Using phigaro via conda #16

Closed chris-rands closed 4 years ago

chris-rands commented 4 years ago

People might find it easier to install phigaro via conda, we could document how to do this. Here is a lightweight way:

conda env create -f environment.yml
conda activate phigaro_env

Where environment.yml contains:

name: phigaro_env
dependencies:
  - python=3.7
  - pip
  - prodigal
  - hmmer
  - pip:
    - phigaro

Then run phigaro-setup

PollyTikhonova commented 4 years ago

Oh, that's a good idea! I'll add this, thank you!